Het_Between

This function computes the value of the mean expected heterozygosity between
all pairwise combinations of different populations.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

Het_Between function

<dl><dt>Pop_Pi</dt>
<dd>is a matrix or list of allele frequencies. When dealing with a
single locus, this input is a matrix and when dealing with multiple loci it
is a list. Each entry of that list is a matrix representing a different
locus. Each row of that matrix should correspond to a different population
and each column to a different SNP.</dd></dl>

Arguments

Compute heterozygosity between all pairs of populations — Het_Between

<dl>

<dt>Pop_Pi</dt>
<dd>is a matrix or list of allele frequencies. When dealing with a
single locus, this input is a matrix and when dealing with multiple loci it
is a list. Each entry of that list is a matrix representing a different
locus. Each row of that matrix should correspond to a different population
and each column to a different SNP.</dd>

</dl>

Het_Between: Compute heterozygosity between all pairs of populations

Description

Usage

Value

Arguments

Details