Tmatrix

This function applies a transformation to the parameter values.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

Tmatrix function

<dl><dt>original</dt>
<dd>a matrix of parameter values i.e. numbers obtained from the
simulations. Each column should be a different parameter and each row a
different simulation. This is the matrix that you wish to transform so that
the parameter values are all in the same scale.</dd>
<dt>limits</dt>
<dd>is a matrix with two columns and as many rows as there are
parameters. Each row should contain the minimum value of the prior for a
given parameter in the first column and the maximum value in the second
column.</dd></dl>

Arguments

Transform matrix of parameter values — Tmatrix

<dl>

<dt>original</dt>
<dd>a matrix of parameter values i.e. numbers obtained from the
simulations. Each column should be a different parameter and each row a
different simulation. This is the matrix that you wish to transform so that
the parameter values are all in the same scale.</dd>


<dt>limits</dt>
<dd>is a matrix with two columns and as many rows as there are
parameters. Each row should contain the minimum value of the prior for a
given parameter in the first column and the maximum value in the second
column.</dd>

</dl>

Tmatrix: Transform matrix of parameter values

Description

Usage

Value

Arguments

Details