abba

Computes the value for the ‘ABBA’ allelic pattern.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

abba function

<dl><dt>p1</dt>
<dd>is a numeric vector with the allele frequencies for population 1.
Each entry of the vector should be a different site.</dd>
<dt>p2</dt>
<dd>is a numeric vector with the allele frequencies for population 2.
Each entry of the vector should be a different site.</dd>
<dt>p3</dt>
<dd>is a numeric vector with the allele frequencies for population 3.
Each entry of the vector should be a different site.</dd></dl>

Arguments

Calculate the abba portion of the D-statistic — abba

<dl>

<dt>p1</dt>
<dd>is a numeric vector with the allele frequencies for population 1.
Each entry of the vector should be a different site.</dd>


<dt>p2</dt>
<dd>is a numeric vector with the allele frequencies for population 2.
Each entry of the vector should be a different site.</dd>


<dt>p3</dt>
<dd>is a numeric vector with the allele frequencies for population 3.
Each entry of the vector should be a different site.</dd>

</dl>

abba: Calculate the abba portion of the D-statistic

Description

Usage

Value

Arguments