meanExpected_Het

This functions calculates the value of the expected heterozygosity for each
site and then computes the mean of those values in order to obtain the mean
expected heterozygosity within each population.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

meanExpected_Het function

<dl><dt>Pop_Pi</dt>
<dd>is a matrix or list of allele frequencies. When dealing with a
single locus, this input is a matrix and when dealing with multiple loci it
is a list. Each entry of that list is a matrix representing a different
locus. Each row of that matrix should correspond to a different population
and each column to a different SNP.</dd></dl>

Arguments

Compute mean expected heterozygosity within a population — meanExpected_Het

<dl>

<dt>Pop_Pi</dt>
<dd>is a matrix or list of allele frequencies. When dealing with a
single locus, this input is a matrix and when dealing with multiple loci it
is a list. Each entry of that list is a matrix representing a different
locus. Each row of that matrix should correspond to a different population
and each column to a different SNP.</dd>

</dl>

meanExpected_Het: Compute mean expected heterozygosity within a population

Description

Usage

Value

Arguments