organizeSCRM

This function is utilized to sort out the scrm output. The order of the
populations changes accordingly to the model used (i.e. single or parallel
origin). Running this function will re-organize the output produced by scrm,
so that the populations are in the same order in both models.

internal

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

organizeSCRM function

<dl><dt>seg_sites</dt>
<dd>a matrix of segregating sites as produced by scrm. Each
column of the matrix is a different site and each row is a different
haplotype.</dd>
<dt>nHap</dt>
<dd>an integer representing the total number of haplotypes simulated.</dd>
<dt>nPops</dt>
<dd>an integer, representing the total number of populations of the
simulated model.</dd></dl>

Arguments

Organize scrm output — organizeSCRM

<dl>

<dt>seg_sites</dt>
<dd>a matrix of segregating sites as produced by scrm. Each
column of the matrix is a different site and each row is a different
haplotype.</dd>


<dt>nHap</dt>
<dd>an integer representing the total number of haplotypes simulated.</dd>


<dt>nPops</dt>
<dd>an integer, representing the total number of populations of the
simulated model.</dd>

</dl>

organizeSCRM: Organize scrm output

Description

Usage

Value

Arguments