scaled.migration

Computes and adds scaled migration rates to a matrix of simulated parameter
values.

Provides functions to simulate Pool-seq data under models of
demographic formation and to import Pool-seq data from real populations.
Implements two ABC algorithms for performing parameter estimation and
model selection using Pool-seq data. Cross-validation can also be
performed to assess the accuracy of ABC estimates and model choice.
Carvalho et al., (2022) <doi:10.1111/1755-0998.13834>.

João Carvalho

poolABC

Approximate Bayesian Computation with Pooled Sequencing Data

Vítor Sousa

scaled.migration function

<dl><dt>parameters</dt>
<dd>is a matrix of simulated parameter values i.e. numbers from
the simulations. Each row or vector entry should be a different simulation
and each column of a matrix should be a different parameter.</dd>
<dt>model</dt>
<dd>a character, either 2pops", "Single" or "Parallel" indicating
which model was simulated.</dd>
<dt>Nref</dt>
<dd>a numeric value indicating the effective population size of the
reference population.</dd></dl>

Arguments

Compute scaled migration rates — scaled.migration

<dl>

<dt>parameters</dt>
<dd>is a matrix of simulated parameter values i.e. numbers from
the simulations. Each row or vector entry should be a different simulation
and each column of a matrix should be a different parameter.</dd>


<dt>model</dt>
<dd>a character, either 2pops", "Single" or "Parallel" indicating
which model was simulated.</dd>


<dt>Nref</dt>
<dd>a numeric value indicating the effective population size of the
reference population.</dd>

</dl>

scaled.migration: Compute scaled migration rates

Description

Usage

Value

Arguments

Details

Examples