SampleOfLoci

An internal function that supports ClusterFromSamples. Sample loci from a
dataset based on the number of loci specified.

Analyzing genetic data obtained from pooled samples.
This package can read in Fragment Analysis output files, process the data,
and score peaks, as well as facilitate various analyses, including cluster
analysis, calculation of genetic distances and diversity indices,
as well as bootstrap resampling for statistical inference. Specifically
tailored to handle genetic data efficiently, researchers can explore
population structure, genetic differentiation, and genetic relatedness
among samples. We updated some functions from Covarrubias-Pazaran et al.
(2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats
and referenced the following to write our genetic analysis functions:
Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008)
<doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973)
<doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006)
<doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008)
<doi:10.1111/j.1541-0420.2008.01010.x>.

Kathleen Kuesters

pooledpeaks

Genetic Analysis of Pooled Samples

Jeffrey Long

Jessica Blanton

Walter Blank

Jeffrey Kovach

Ronald Blanton

SampleOfLoci function

<dl><dt>aaax</dt>
<dd>A data frame containing the input data must be in LoadData
style LoadData.</dd>
<dt>NLoci</dt>
<dd>An integer specifying the number of loci to sample.</dd></dl>

Arguments

Sample Of Loci — SampleOfLoci

<dl>

<dt>aaax</dt>
<dd>A data frame containing the input data must be in LoadData
style LoadData.</dd>


<dt>NLoci</dt>
<dd>An integer specifying the number of loci to sample.</dd>

</dl>

SampleOfLoci: Sample Of Loci

Description

Usage

Value

Arguments