generate.jackknife.blocks

A pooldata or countdata object containing SNP positions (snp.info slot)

Number of consecutive SNPs of each block-jackknife block

nsnp.per.bjack.block

If TRUE extra information is printed on the terminal

verbose

Generate block coordinates for block-jackknife

Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).

Mathieu Gautier

poolfstat

Computing f-Statistics and Building Admixture Graphs Based on
Allele Count or Pool-Seq Read Count Data

generate.jackknife.blocks function

<dl><dt>x</dt>
<dd>A pooldata or countdata object containing SNP positions (snp.info slot)</dd>
<dt>nsnp.per.bjack.block</dt>
<dd>Number of consecutive SNPs of each block-jackknife block</dd>
<dt>verbose</dt>
<dd>If TRUE extra information is printed on the terminal</dd></dl>

Arguments

Generate block coordinates for block-jackknife — generate.jackknife.blocks

<dl>

<dt>x</dt>
<dd>A pooldata or countdata object containing SNP positions (snp.info slot)</dd>


<dt>nsnp.per.bjack.block</dt>
<dd>Number of consecutive SNPs of each block-jackknife block</dd>


<dt>verbose</dt>
<dd>If TRUE extra information is printed on the terminal</dd>

</dl>

generate.jackknife.blocks: Generate block coordinates for block-jackknife

Description

Usage

Value

Arguments