bjack_cov

Compute the block-jackknife covariance between two stats

Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).

Mathieu Gautier

poolfstat

Computing f-Statistics and Building Admixture Graphs Based on
Allele Count or Pool-Seq Read Count Data

bjack_cov function

<dl><dt>stat1</dt>
<dd>Vector of block-jackknife values for the first stat</dd>
<dt>stat2</dt>
<dd>Vector of block-jackknife values for the second stat</dd></dl>

Arguments

bjack_cov — bjack_cov

<dl>

<dt>stat1</dt>
<dd>Vector of block-jackknife values for the first stat</dd>


<dt>stat2</dt>
<dd>Vector of block-jackknife values for the second stat</dd>

</dl>

bjack_cov: bjack_cov

Description

Value

Arguments

Details

Examples