generateF4names

.generateF4names

Generate all names for F4 stats (same order as computation)

Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).

Mathieu Gautier

poolfstat

Computing f-Statistics and Building Admixture Graphs Based on
Allele Count or Pool-Seq Read Count Data

generateF4names function

<dl><dt>popnames</dt>
<dd>String vector with the names of all the pops</dd></dl>

Arguments

generateF4names — generateF4names

<dl>

<dt>popnames</dt>
<dd>String vector with the names of all the pops</dd>

</dl>

generateF4names: generateF4names

Description

Usage

Value

Arguments

Details