plot,pairwisefst-method

Functions for the computation of f- and D-statistics (estimation of 'Fst', Patterson's 'F2', 'F3', 'F3*', 'F4' and D parameters) in population genomics studies from allele count or Pool-Seq read count data and for the fitting, building and visualization of admixture graphs. The package also includes several utilities to manipulate Pool-Seq data stored in standard format (e.g., such as 'vcf' files or 'rsync' files generated by the the 'PoPoolation' software) and perform conversion to alternative format (as used in the 'BayPass' and 'SelEstim' software). As of version 2.0, the package also includes utilities to manipulate standard allele count data (e.g., stored in 'TreeMix', 'BayPass' or 'SelEstim' format).

Mathieu Gautier

poolfstat

Computing f-Statistics and Building Admixture Graphs Based on
Allele Count or Pool-Seq Read Count Data

plot,pairwisefst-method function

<dl><dt>x</dt>
<dd>Object of class pairwisefst</dd>
<dt>y</dt>
<dd>dummy argument</dd>
<dt>...</dt>
<dd>Some arguments to be passed to plot_fstats</dd></dl>

Arguments

plot pairwisefst object — plot,pairwisefst-method

<dl>

<dt>x</dt>
<dd>Object of class pairwisefst</dd>


<dt>y</dt>
<dd>dummy argument</dd>


<dt>...</dt>
<dd>Some arguments to be passed to plot_fstats</dd>

</dl>

plot,pairwisefst-method: plot pairwisefst object

Description

Usage

Arguments

See Also