Compute SNP-specific MSI, MSP, MSG, nc, nc_p and nc_pp used to derived the Anova estimator of hier. Fst for allele count or read count data (Pool-Seq)
.compute_snpHierFstAov(refcount, totcount, hapsize, popgrpidx, verbose)Return a nsnpsx6 matrix with SNP-specific MSI, MSP, MSG, nc, nc_p and nc_pp
Matrix of nsnpxnpop with counts (genotype or reads) for the reference allele
Matrix of nsnpxnpop with total counts or read coverages
Vector of length npop giving the haploid size of each pool (if one element <=0, counts are interpreted as count data)
Vector of length npop giving the index (coded from 0 to ngrp-1) of the group of origin
Logical (if TRUE progression bar is printed on the terminal)
Compute SNP-specific MSI, MSP, MSG, nc, nc_p and nc_pp used to derived the Anova estimator of hier. Fst for allele count or read count data (Pool-Seq)