Compute SNP-specific Q1 over all samples using weighting averages of pop. Q1 (eq. A46 in Hivert et al., 2018)
.compute_snpQ1rw(refcount, totcount, weight, sampsize, readcount, verbose)Return a vector of length nsnps with SNP-specific Q1
Matrix of nsnpxnpop with counts (genotype or reads) for the reference allele
Matrix of nsnpxnpop with total counts or read coverages
Vector of length npop giving the weighting scheme (w=1 for allele count data and w=poolsize/(poolsize-1) for PoolSeq data)
Vector of length npop giving the haploid sample size (not used for count data)
Logical (if TRUE PoolSeq data assumed i.e. weights depending on haploid size, otherwise weights depend on total counts)
Logical (if TRUE progression bar is printed on the terminal)
Compute all the SNP-specific Q1 over all pop. samples using weighting averages of pop. Q1 as in eq. A46 of Hivert et al., 2018 (useful for Fst computation with method Identity).