Learn R Programming
⚠️There's a newer version (1.4) of this package.Take me there.

popgraph (version 1.0)

This is an R package that constructs and manipulates population graphs.

Description

This is a generic package that produces "Population Graphs" a graph-theoretic topology based upon conditional genetic covariance. This functionality used to be within the gstudio package, but has been taken out to focus on spatial integration of graph topologies with existing packages like sp, raster, and ggplot2.

Copy Link

Version

Install

install.packages('popgraph')

Monthly Downloads

5

Version

1.0

License

GPL (>= 2)

Maintainer

Rodney Dyer

Last Published

March 16th, 2013

Functions in popgraph (1.0)

decorate_graph

Merge data into popgraph node-wise
to_pgraph

Converts graph to a pgraph file format
centroid_variance

This function takes a data set and a group set and returns centroid variances
alt

Sonoran desert altitude.
as.population_graph

Converts an object of type matrix or igraph into population_graph
to_SpatialPoints

Extract nodes as SpatialPoints
centroid_distance

This function takes a data set and a group set and returns centroid distances
to_SpatialLines

Converts edge set to SpatialLines object
popgraph-package

Package for the creation of population graph objects
to_matrix

Matrix conversion for Population Graph
population_graph

Default constructor for a PopulationGraph object
to_html

Converts population graph to html file for interactive viewing
test_congruence

Returns distance congruence between the two graphs
to_json

Converts to json representation
baja

Metadata for Baja Populations.
upiga

Upiga population graph
read.population_graph

Reads in a population graph text file
congruence_topology

Returns congruence topology
lopho

Lophocereus population graph
to_kml

Converts population graph to KML file
write.population_graph

Convience function for file exports
overlay_population_graph

Convience function to plot edges from population_graph