Imports tabular data (Admixture, fastStructure etc) and creates a table with filenames, K and number of individuals.
tabulateRunsMatrix(files = NULL, writetable = FALSE, sorttable = TRUE,
quiet = FALSE)A character vector of MATRIX cluster files to be tabulated. See details. On windows, use choose.files(multi = TRUE) for interactive selection.
A logical indicating if output table must be exported as a tab-delimited text file in the working directory.
A logical indicating if output table is to be sorted. Sorts table by ind and K.
A logical indicating if a message showing the number of selected files is displayed. The message is supressed if set to T.
Returns a dataframe with filenames, K and number of individuals of all runs sorted by ind and K (if sorttable = T).
The row numbers of the output table denotes the file number selected. This is helpful if a particular file from the table needs to
be identified in the selection vector.
Expected input files are Admixture run files or fastStructure meanQ files. Input files can be any tab-delimited, space-delimited or comma-delimited tabular data without headers.
tabulateRunsStructure, tabulateRunsTess
alist <- list.files(path=system.file("files/admixture",package="pophelper"),full.names=TRUE)
tabulateRunsMatrix(files=alist)