Usage
genind2genalex(gid, filename = "genalex.csv", quiet = FALSE, pop = NULL,
allstrata = TRUE, geo = FALSE, geodf = "xy", sep = ",")
Arguments
gid
a genclone or genind
object.
filename
a string indicating the name and/or path of the file you wish
to create.
quiet
logical If FALSE a message will be printed to the
screen.
pop
a character vector OR formula specifying the population factor.
This can be used to specify a specific subset of strata or custom
population factor for the output. Note that the allstrata command
has precedence over this unless the value o
allstrata
if this is TRUE, the strata will be combined into a
single population factor in the genalex file.
geo
logical Default is FALSE. If it is set to
TRUE, the resulting file will have two columns for geographic data.
geodf
character Since the other slot in the adegenet
object can contain many different items, you must specify the name of the
data frame in the other slot containing your geographic coordinates.
It defaults to "xy".
sep
a character specifying what character to use to separate columns.
Defaults to ",".