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popsom (version 6.0)

An Efficient Implementation of Kohonen's Self-Organizing Maps (SOMs) with Starburst Visualizations

Description

Kohonen's self-organizing maps with a number of distinguishing features: (1) An efficient, single threaded, stochastic training algorithm inspired by ideas from tensor algebra. Provides significant speedups over traditional single-threaded training algorithms. No special accelerator hardware required (see ). (2) Automatic centroid detection and visualization using starbursts. (3) Two models of the data: (a) a self organizing map model, (b) a centroid based clustering model. (4) A number of easily accessible quality metrics for the self organizing map and the centroid based cluster model (see ).

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Install

install.packages('popsom')

Monthly Downloads

18

Version

6.0

License

GPL-3

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Maintainer

Lutz Hamel

Last Published

December 20th, 2021

Functions in popsom (6.0)

map.marginal

Plot Marginal Distribution
map.significance

Compute Significance of Features
map.predict

Compute Classification Labels for Given Points
map.summary

Summary Object for Map
map.fitted

Fit Observations
map.starburst

Generate Starburst For Map
map.build

Build Map
map.position

Compute Map Positions for Given Points
map.convergence

SOM Quality Assessment