sampletrees

A sample of 100 dated phylogenies from Leache &amp; Sites (2009), trimmed for analysis by Lawing et al (2016).<ul>
<li>Lawing et al (2016) Including fossils in phylogenetic climate reconstructions: A deep time perspective on the climatic niche evolution and diversification of spiny lizards (Sceloporus) The American Naturalist 188(2): 133-148</li>
<li>Leache &amp; Sites (2009) Chromosome evolution and diversification in North American Spiny Lizards (Genus Sceloporus) Cytogenetic and Genome Research 127(2-4) 166-181</li>
</ul>

datasets

Reconstruction of paleoclimate niches using phylogenetic comparative
methods and projection reconstructed niches onto paleoclimate maps.
The user can specify various models of trait evolution or estimate the best fit
model, include fossils, use one or multiple phylogenies for inference, and make
animations of shifting suitable habitat through time. This model was first used
in Lawing and Polly (2011), and further implemented in Lawing et al (2016) and
Rivera et al (2020).
Lawing and Polly (2011) <doi:10.1371/journal.pone.0028554> "Pleistocene climate,
phylogeny and climate envelope models: An integrative approach to better
understand species' response to climate change"
Lawing et al (2016) <doi:10.1086/687202> "Including fossils in phylogenetic
climate reconstructions: A deep time perspective on the climatic niche evolution
and diversification of spiny lizards (Sceloporus)"
Rivera et al (2020) <doi:10.1111/jbi.13915> "Reconstructing historical shifts
in suitable habitat of Sceloporus lineages using phylogenetic niche modelling.".

Alexandra Howard

ppgm

PaleoPhyloGeographic Modeling of Climate Niches and Species
Distributions

A. Michelle Lawing

Maria-Aleja Hurtado-Materon

sampletrees function

'sampletrees'
100 trees as class multiPhylo

sampletrees: Sample of Sceloporus phylogenies

Description

Usage

Arguments

Format