ppiPre-package: Predicting protein-protein interactions
Description
Predicting protein-protein interactions based on functional and topologic similaritiesDetails
This package integrates functions for computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features(similarities) to predict PPIs using an SVM classifier.
Some internal functions to manipulate GO.db are derived from R package GOSemSim authored by Guangchuang Yu
ll{
Package: ppiPre
Type: Package
Version: 1.6
Date: 2015-01-25
Depends: R (>= 3.0.0)
Imports: AnnotationDbi, igraph, e1071, GOSemSim, GO.db
Suggests: KEGG.db, org.Hs.eg.db
Enhances: org.Sc.sgd.db, org.Ag.eg.db, org.Xl.eg.db, org.Ss.eg.db,
org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db,
org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db,
org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db,
org.Pt.eg.db, org.Rn.eg.db
License: GPL-2
LazyLoad: yes
}