ppiPre (version 1.6)

ppiPre-package: Predicting protein-protein interactions

Description

Predicting protein-protein interactions based on functional and topologic similarities

Arguments

Details

This package integrates functions for computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features(similarities) to predict PPIs using an SVM classifier. Some internal functions to manipulate GO.db are derived from R package GOSemSim authored by Guangchuang Yu ll{ Package: ppiPre Type: Package Version: 1.6 Date: 2015-01-25 Depends: R (>= 3.0.0) Imports: AnnotationDbi, igraph, e1071, GOSemSim, GO.db Suggests: KEGG.db, org.Hs.eg.db Enhances: org.Sc.sgd.db, org.Ag.eg.db, org.Xl.eg.db, org.Ss.eg.db, org.At.tair.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.EcK12.eg.db, org.EcSakai.eg.db, org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Pf.plasmo.db, org.Pt.eg.db, org.Rn.eg.db License: GPL-2 LazyLoad: yes }

See Also

GOKEGGSims IntelliGOGeneSim TCSSGeneSim SVMPredict TopologicSims