edges <- data.frame(node1=c("1132", "1133", "1134", "1134", "1145", "1147", "1147", "1147"),
node2=c("1134", "1134", "1145", "1147", "1147", "1148", "1149", "1150"))
graph<-igraph::graph.data.frame(edges,directed=FALSE)
samplefile <- "ppiPre-TopologicSims-sample.csv"
write.csv(edges,file=samplefile,row.names=FALSE)
TopologicSims(samplefile,outputfile="TopologicSimstest-ppiPre.csv", header=TRUE, sep=",")
result<-read.csv(file="TopologicSimstest-ppiPre.csv")
print(result)
Run the code above in your browser using DataCamp Workspace