.initial

CheckAnnotationPackage

GetGOMap

GetGOParents

GetLatestCommonAncestor

GetOntology

IntelliGOComputeEiEj

IntelliGOGetDepth

IntelliGOGetParents

IntelliGOGOSim

IntelliGOInverseAnnotationFrequency

TCSSCompute_ICA

TCSSGetAncestors

TCSSGetChildren

TCSSGetOffsprings

TCSSGoSim

internal

ppiPre-internal

Computing similarities between proteins based on their GO annotation, KEGG annotation and PPI network topology. It integrates seven features (TCSS, IntelliGO, Wang, KEGG, Jaccard, RA and AA) to predict PPIs using an SVM classifier. Some internal functions to calculate GO semantic similarities are re-used from R package GOSemSim authored by Guangchuang Yu.

Yue Deng

ppiPre

Predict Protein-Protein Interactions Based on Functional and
Topological Similarities

ppiPre-internal function

Internal ppiPre objects

ppiPre-internal: Internal ppiPre objects

Description

Arguments

Details