ppiStats (version 1.38.0)

separateExptBySize: A function to partition experiments in user defined small, medium, large scale experiments

Description

This function partitions protein interaction data into one of three classes defined by boundaries supplied by the users.

Usage

separateExptBySize(listOfGraphs, bound1, bound2)

Arguments

listOfGraphs

A list containing graphNEL objects to be sorted by the number of edges

bound1

An integer. The strict upper bound for the small scale experiments and the lower bound for the medium scale experiments.

bound2

An integer. The upper bound for the medium scale experiments, and the strict lower bound for the large scale experiments.

Value

A list:

small

A list of graph objects with the number of edges in each graph less than bound1.

medium

A list of graph objects with the number of edges in each graph of a value between that of bound1 and bound2.

large

A list of graph objects with the number of edges in each graph greater than bound2.

Details

A function to partition graphs based on the number of edges.