pqrBayes (version 1.2.0)

predict_pqrBayes: Make predictions from a pqrBayes object

Description

Make predictions from a pqrBayes object

Usage

predict_pqrBayes(object, g.new, u.new, e.new, y.new, quant, model, ...)

Value

an object of class `pqrBayes.pred' is returned, which is a list with components:

error

prediction error.

y.pred

predicted values of the new observations.

Arguments

object

a pqrBayes object.

g.new

a matrix of new predictors (e.g. genetic factors) at which predictions are to be made. When being applied to the sparse linear, binary LASSO or group LASSO, g.new = g.

u.new

a vector of new environmental factor at which predictions are to be made. When being applied to the sparse linear model, binary LASSO or group LASSO, u.new = e.

e.new

a vector or matrix of new clinical covariates at which predictions are to be made.

y.new

a vector of the response of new observations. When being applied to the sparse linear model, binary LASSO or group LASSO, y.new = y.

quant

the quantile level. The default is 0.5.

model

the model to be fitted. The default is "VC" for a quantile varying coefficient model. Users can also specify "linear" for a sparse linear model, "binary" for binary LASSO and "group" for a group LASSO.

...

other predict arguments

Details

g.new (u.new) must have the same number of columns as g (u) used for fitting the model. By default, the clinical covariates are NULL unless provided. The predictions are made based on the posterior estimates of coefficients in the pqrBayes object.

See Also

pqrBayes

Examples

## The quantile regression model
data(data)
data = data$data_linear
g=data$g
y=data$y
e=data$e
fit1=pqrBayes(g,y,e,d = NULL,quant=0.5,model="linear")
prediction=predict_pqrBayes(fit1,g,u.new=e,e.new = NULL, y.new = y,model="linear")