comp.test

a vector of integers. Clustering of species (may be taken
    from <code>prabclust</code>).

a vector of integers of the same length, groups of species.

Tests for independence between a clustering and another grouping of species.
  This is simply an interface to <code>chisq.test</code>.

htest

Distance-based parametric bootstrap tests for clustering, 
  mainly intended for presence-absence data and abundance data 
  (clustering of species
  distribution ranges). Jaccard, Kulczynski, quantitative Kulczynski 
  and geco distance measures, 
  clustering of presence-absence and abundance data, and nearest neighbor 
  based noise detection (R port of Byers
  and Raftery's (1998) "NNclean"). Main functions are prabtest, abundtest (for
  testing), prabclust (for clustering), prabinit (for preparing the data)
  and NNclean (for noise detection). The help-pages for prabtest, abundtest and
  prabclust contain simple standard executions. Note that the use of the 
  package mclust (called by function prabclust) is protected by a special 
  license, see http://www.stat.washington.edu/mclust/license.txt, particularly
  point 6. 

comp.test: Compare species clustering and species groups

Description

Usage

Arguments

Value

Details

References

See Also

Examples