Spatial autocorrelation parameter estimation
Shared allele distance for diploid loci
Internal: generates neighborhood list for diploid loci
Parametric bootstrap test for clustering in abundance matrices
Neighborhood list for Aegean islands
Distance ratio test statistics for distance based clustering
Average within-group distances for given groups
Internal: create character matrix out of allele list
Simulation of presence-absence matrices (clustered)
Geographical coordinates to distances
Estimates SAR model from log-abundance matrix of prab-object.
Genetic AFLP data of Veronica plants
Neighborhood list from geographical distance
Visualises clusters of markers vs. species
Compare species clustering and species groups
Mean distance to kth nearest neighbor
Clustering for biotic elements or for species delimitation
(mixture method)
geco distance matrix
Convert abundance matrix into presence/absence matrix
Stress values for different dimensions of Kruskal's MDS
prabclus package overview
Snail presence-absence data from Aegean sea
Connectivity components of an undirected graph
Region-wise cluster membership
Parametric bootstrap test for clustering in presence-absence matrices
Microsatellite genetic data of Tetragonula bees
Classical distance-based test for homogeneity against clustering
Largest connectivity component
Nestedness matrix
Clustering of species ranges from presence-absence matrices
(hierarchical methods)
Overwater distances between islands in the Aegean sea
Simulation of abundance matrices (non-clustered)
Nearest neighbor based clutter/noise detection
Format conversion for codominant marker data
Test of neighborhood list
Jaccard distance matrix
Dice distance matrix
Kulczynski distance matrix
Quantitative Kulczynski distance matrix
Presence-absence/abundance matrix initialization
Internal: create allele list out of character matrix
Piecewise linear transformation for distance matrices
p-value simulation for presence-absence matrices clustering test
Herbs of the Siskiyou Mountains
Converts alleleobject into binary matrix
Generate spatial weights from prabclus neighborhood list
Simulation of presence-absence matrices (non-clustered)
Connected regions per species
Missing values statistics for matrix
Internal: compares two pairs of alleles
Diploid loci matrix initialization