Format conversion for codominant marker data
Dice distance matrix
Parametric bootstrap test for clustering in abundance matrices
Nestedness matrix
Nearest neighbor based clutter/noise detection
Diploid loci matrix initialization
Converts alleleobject into binary matrix
Internal: create character matrix out of allele list
Test of neighborhood list
Geographical coordinates to distances
Classical distance-based test for homogeneity against clustering
prabclus package overview
Clustering of species ranges from presence-absence matrices
(hierarchical methods)
geco distance matrix
Simulation of abundance matrices (non-clustered)
Compare species clustering and species groups
Connectivity components of an undirected graph
Connected regions per species
Simulation of presence-absence matrices (clustered)
Overwater distances between islands in the Aegean sea
Microsatellite genetic data of Tetragonula bees
Piecewise linear transformation for distance matrices
Presence-absence/abundance matrix initialization
Herbs of the Siskiyou Mountains
Parametric bootstrap test for clustering in presence-absence matrices
Quantitative Kulczynski distance matrix
Visualises clusters of markers vs. species
p-value simulation for presence-absence matrices clustering test
Neighborhood list for Aegean islands
Average within-group distances for given groups
Largest connectivity component
Estimates SAR model from log-abundance matrix of prab-object.
Convert abundance matrix into presence/absence matrix
Stress values for different dimensions of Kruskal's MDS
Kulczynski distance matrix
Internal: compares two pairs of alleles
Region-wise cluster membership
Jaccard distance matrix
Internal: generates neighborhood list for diploid loci
Clustering for biotic elements or for species delimitation
(mixture method)
Spatial autocorrelation parameter estimation
Genetic AFLP data of Veronica plants
Snail presence-absence data from Aegean sea
Generate spatial weights from prabclus neighborhood list
Mean distance to kth nearest neighbor
Internal: create allele list out of character matrix
Simulation of presence-absence matrices (non-clustered)
Shared allele distance for diploid loci
Distance ratio test statistics for distance based clustering
Missing values statistics for matrix
Neighborhood list from geographical distance