Herbs of the Siskiyou Mountains
Overwater distances between islands in the Aegean sea
Largest connectivity component
Internal: create allele list out of character matrix
Diploid loci matrix initialization
Parametric bootstrap test for clustering in abundance matrices
Internal: compares two pairs of alleles
Jaccard distance matrix
Simulation of presence-absence matrices (non-clustered)
Simulation of abundance matrices (non-clustered)
Clustering of species ranges from presence-absence matrices
(hierarchical methods)
Convert abundance matrix into presence/absence matrix
Converts alleleobject into binary matrix
Connectivity components of an undirected graph
Region-wise cluster membership
Spatial autocorrelation parameter estimation
Internal: create character matrix out of allele list
Geographical coordinates to distances
Microsatellite genetic data of Tetragonula bees
Parametric bootstrap test for clustering in presence-absence matrices
Simulation of presence-absence matrices (clustered)
Average within-group distances for given groups
Internal: generates neighborhood list for diploid loci
Clustering for biotic elements or for species delimitation
(mixture method)
Connected regions per species
Neighborhood list from geographical distance
Visualises clusters of markers vs. species
Nestedness matrix
Classical distance-based test for homogeneity against clustering
Nearest neighbor based clutter/noise detection
Quantitative Kulczynski distance matrix
Neighborhood list for Aegean islands
geco distance matrix
Distance ratio test statistics for distance based clustering
Kulczynski distance matrix
Presence-absence/abundance matrix initialization
Shared allele distance for diploid loci
Mean distance to kth nearest neighbor
Stress values for different dimensions of Kruskal's MDS
Estimates SAR model from log-abundance matrix of prab-object.
Format conversion for codominant marker data
Compare species clustering and species groups
Missing values statistics for matrix
Generate spatial weights from prabclus neighborhood list
prabclus package overview
p-value simulation for presence-absence matrices clustering test
Genetic AFLP data of Veronica plants
Dice distance matrix
Snail presence-absence data from Aegean sea
Test of neighborhood list
Piecewise linear transformation for distance matrices