geco distance matrix
Visualises clusters of markers vs. species
Largest connectivity component
Missing values statistics for matrix
Converts alleleobject into binary matrix
Presence-absence/abundance matrix initialization
Format conversion for codominant marker data
Internal: compares two pairs of alleles
Region-wise cluster membership
Spatial autocorrelation parameter estimation
Dice distance matrix
Compare species clustering and species groups
Connectivity components of an undirected graph
Neighborhood list from geographical distance
Neighborhood list for Aegean islands
Classical distance-based test for homogeneity against clustering
prabclus package overview
Quantitative Kulczynski distance matrix
Test of neighborhood list
Simulation of abundance matrices (non-clustered)
Overwater distances between islands in the Aegean sea
Parametric bootstrap test for clustering in presence-absence matrices
Clustering for biotic elements or for species delimitation
(mixture method)
Simulation of presence-absence matrices (non-clustered)
Microsatellite genetic data of Tetragonula bees
Herbs of the Siskiyou Mountains
Internal: create character matrix out of allele list
Convert abundance matrix into presence/absence matrix
Internal: generates neighborhood list for diploid loci
Connected regions per species
Geographical coordinates to distances
Clustering of species ranges from presence-absence matrices
(hierarchical methods)
Nestedness matrix
Mean distance to kth nearest neighbor
Piecewise linear transformation for distance matrices
Shared allele distance for diploid loci
Internal: create allele list out of character matrix
Diploid loci matrix initialization
Generate spatial weights from prabclus neighborhood list
Simulation of presence-absence matrices (clustered)
Genetic AFLP data of Veronica plants
Kulczynski distance matrix
Jaccard distance matrix
p-value simulation for presence-absence matrices clustering test
Estimates SAR model from log-abundance matrix of prab-object.
Average within-group distances for given groups
Stress values for different dimensions of Kruskal's MDS
Snail presence-absence data from Aegean sea
Nearest neighbor based clutter/noise detection
Distance ratio test statistics for distance based clustering
Parametric bootstrap test for clustering in abundance matrices