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predhy (version 1.2.1)

Genomic Prediction of Hybrid Performance

Description

Performs genomic prediction of hybrid performance using eight GS methods including GBLUP, BayesB, RKHS, PLS, LASSO, Elastic net, Random forest and XGBoost. It also provides fast cross-validation and mating design scheme for training population (Xu S et al (2016) ; Xu S (2017) ).

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Version

Install

install.packages('predhy')

Monthly Downloads

231

Version

1.2.1

License

GPL-3

Maintainer

Yang Xu

Last Published

November 8th, 2022

Functions in predhy (1.2.1)

hybrid_phe

Phenotypic data of hybrids
cv_fast

Evaluate Trait Predictability via the HAT Method
infergen

Infer Genotype of Hybrids
crodesign

Generate Mating Design
predhy.predict

Predict the Performance of Hybrids
convertgen

Convert Genotype
input_geno1

Genotype in Numeric Format
kin

Calculate Kinship Matrix
predhy.predict_NCII

Predict the Performance of Hybrids
mixed

Solve Mixed Model
input_geno

Genotype in Hapmap Format
cv

Evaluate Trait Predictability via Cross Validation