predicts (version 0.1-17)

hull_model: hull model

Description

The hull model predicts that a species is present at sites inside the a hull that contains the training points, and is absent outside that circle.

The hull can be "convex", "circle", or "rectangle"

Usage

# S4 method for SpatVector
hullModel(p, type="convex", n=1)
# S4 method for data.frame
hullModel(p, type="convex", crs="", n=1)
# S4 method for matrix
hullModel(p, type="convex", crs="", n=1)

Value

hull_model

Arguments

p

point locations (presence). Two column matrix, data.frame or SpatVector

type

character. The type of hull. One of "convex", "circle", or "rectangle"

crs

character. The coordinate reference system

n

positive integer. The number of hulls to make

Examples

r <- rast(system.file("ex/logo.tif", package="terra"))   
#presence data
pts <- matrix(c(17, 42, 85, 70, 19, 53, 26, 84, 84, 46, 48, 85, 4,
    95, 48, 54, 66, 74, 50, 48, 28, 73, 38, 56, 43, 29, 63, 22, 46, 45,
    7, 60, 46, 34, 14, 51, 70, 31, 39, 26), ncol=2)
train <- pts[1:12, ]
test <- pts[13:20, ]
				 
ch <- hullModel(train, crs="+proj=longlat")
predict(ch, test)

plot(r)
plot(ch, border="red", lwd=2, add=TRUE)
points(train, col="red", pch=20, cex=2)
points(test, col="black", pch=20, cex=2)

pr <- predict(ch, r)
plot(pr)
points(test, col="black", pch=20, cex=2)
points(train, col="red", pch=20, cex=2)

# to get the polygons:
p <- geometry(ch)
p