prevR v3.4.0

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by Joseph Larmarange View Source

Estimating Regional Trends of a Prevalence from a DHS

Spatial estimation of a prevalence surface or a relative risks surface, using data from a Demographic and Health Survey (DHS) or an analog survey, see Larmarange et al. (2011) <doi:10.4000/cybergeo.24606>.

Functions in prevR

Name	Description
direct.label_prevR	Direct label on a ggplot object
export,prevR-method	Export an object of class prevR.
point.in.SpatialPolygons	Test if a point falls within a given polygon.
prevR-class	Objects of class prevR.
xyz2dataframe	Convert a surface in xyz to a data frame.
TMWorldBorders	Dataset "TM World Borders Dataset 0.3".
as.SpatialGrid,prevR-method	Create a spatial grid from an object of class prevR.
fdhs	Fictitious data generated by a DHS simulation.
import.dhs	Import DHS data.
changeproj,prevR-method	Convert map projection of a object of class prevR.
print,prevR-method	Summary of a prevR object.
as.data.frame.prevR	Convert an object of class prevR into a data.frame.
as.prevR	Create an object of class prevR.
is.prevR	Test if an object is of class prevR. This function test if the class of an object is prevR. It could be used to test the slot rings or the slot boundary.
create.boundary	Provide national boundaries of a country.
prevR-package	Estimating regional trends of a prevalence from a DHS.
quick.prevR	Quick prevR analysis and plot
kde,prevR-method	Kernel density estimation for prevR object.
rings,prevR-method	Calculation of rings of equal number of observation and/or equal radius.
prevR.colors	Continuous color palettes.
summary,prevR-method	Detailed summary of the variables of a prevR object
show,prevR-method	Summary of a prevR object.
theme_prevR	prevR themes for ggplot2
NA.outside.SpatialPolygons	Affect NA value to points located outside a polygon.
Noptim	Suggested optimal value for N
krige,ANY,prevR-method	Spatial interpolation (kriging and inverse distance weighting) for objects of class prevR.
plot,prevR,missing-method	Plot object of class prevR.
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Vignettes of prevR

Name
intro_prevR.Rmd
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Details

Type	Package
Acknowledgements	funding from ANRS and IRD, and technical support from LYSIS (info@lysis-consultants.fr)
License	CeCILL
URL	https://github.com/larmarange/prevR/
BugReports	https://github.com/larmarange/prevR/issues
LazyLoad	yes
LazyData	yes
Encoding	UTF-8
Collate	'prevR-package.r' 'setClass.prevR.r' 'is.prevR.r' 'as.prevR.r' 'onAttach.r' 'isInputOk.prevR.r' 'changeproj.prevR.r' 'colors.prevR.r' 'as.data.frame.prevR.r' 'plot.prevR.r' 'show.prevR.r' 'print.prevR.r' 'summary.prevR.r' 'rings.prevR.r' 'as.SpatialGrid.prevR.r' 'create.boundary.prevR.r' 'export.prevR.r' 'import.dhs.prevR.r' 'point.in.SpatialPolygons.prevR.r' 'NA.outside.SpatialPolygons.prevR.r' 'xyz2dataframe.prevR.r' 'init.exp.model.variogram.r' 'eyefit.prevR.r' 'krige.prevR.r' 'kde.prevR.r' 'Noptim.r' 'theme_prevR.r' 'direct.label_prevR.r' 'quick.prevR.r'
VignetteBuilder	knitr
RoxygenNote	6.1.1
NeedsCompilation	no
Packaged	2019-05-06 19:05:15 UTC; Larmarange
Repository	CRAN
Date/Publication	2019-05-06 20:51:23 UTC

imports	directlabels , fields , foreign , GenKern , ggplot2 , gstat , maptools , methods , rgdal (>= 0.7) , sp
suggests	geoR , knitr , rmarkdown , tcltk
depends	R (>= 2.10)
Contributors