plot_tree

to be plotted, use layout_tree to layout tree.

tree

The type of tree to plot, default unrooted.

type

main

The size of the length guide. If NULL auto detects a
reasonable size.

guide_size

The rank to include, if null only the tree is plotted

rank

A data.frame with an accession field corresponding to the
tree tip labels.

taxonomy

size

The number of different taxa names after which the
names are no longer printed.

legend_cutoff

additional arguments passed to <code><a rd-options="" href="/link/layout_tree_ape?package=primerTree&version=1.0.4" data-mini-rdoc="primerTree::layout_tree_ape">layout_tree_ape</a></code>

plots a tree, optionally with colored and labeled points by taxonomic rank

Identifies potential target sequences for a given set of primers
and generates phylogenetic trees annotated with the taxonomies of the predicted
amplification products.

Jim Hester

primerTree

Visually Assessing the Specificity and Informativeness of Primer
Pairs

plot_tree function

additional arguments passed to <code><a rd-options='' href='layout_tree_ape'>layout_tree_ape</a></code>

plot_tree: plots a tree, optionally with colored and labeled points by taxonomic rank

Description

Usage

Arguments

Value