primerTree

primerTree-package

<p><code>primerTree</code> has two main commands:
<code><a rd-options="" href="/link/search_primer_pair?package=primerTree&version=1.0.4" data-mini-rdoc="primerTree::search_primer_pair">search_primer_pair</a></code> which takes a primer pair and returns an
primerTree object of the search results
<code><a rd-options="" href="/link/plot.primerTree?package=primerTree&version=1.0.4" data-mini-rdoc="primerTree::plot.primerTree">plot.primerTree</a></code> a S3 method for plotting the primerTree object
obtained using <code><a rd-options="" href="/link/search_primer_pair?package=primerTree&version=1.0.4" data-mini-rdoc="primerTree::search_primer_pair">search_primer_pair</a></code></p>

Identifies potential target sequences for a given set of primers
and generates phylogenetic trees annotated with the taxonomies of the predicted
amplification products.

Jim Hester

Visually Assessing the Specificity and Informativeness of Primer
Pairs

primerTree function

<p><code>primerTree</code> has two main commands:
<code><a rd-options='' href='search_primer_pair'>search_primer_pair</a></code> which takes a primer pair and returns an
primerTree object of the search results
<code><a rd-options='' href='plot.primerTree'>plot.primerTree</a></code> a S3 method for plotting the primerTree object
obtained using <code><a rd-options='' href='search_primer_pair'>search_primer_pair</a></code></p>

primerTree: primerTree Visually Assessing the Specificity and Informativeness of Primer Pairs

Description

Arguments