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prodlim (version 1.4.5)

Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis.

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Version

Install

install.packages('prodlim')

Monthly Downloads

129,133

Version

1.4.5

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

September 2nd, 2014

Functions in prodlim (1.4.5)

getEvent

Extract a column from an event history object.
Hist

Create an event history response variable
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
backGround

Background and grid color control.
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johannsen estimates of survival and cumulative incidence.
clusterTestData

Data set with a clustered data structure, for testing the product limit method.
SimCompRisk

Simulate competing risks data
SmartControl

Function to facilitate the control of arguments passed to subroutines.
summary.Hist

Summary of event histories
atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johannsen plots.
getStates

States of a multi-state model
model.design

Extract a design matrix and specials from a model.frame
crModel

Competing risks model for simulation
parseSpecialNames

Parse special terms
plot.Hist

Box-arrow diagrams for multi-state models.
survModel

Survival model for simulation
predict.prodlim

Predicting event probabilities from product limit estimates
leaveOneOut

Compute jackknife pseudo values.
jackknife

Compute jackknife pseudo values.
row.match

Identifying rows in a matrix or data.frame
plotIllnessDeathModel

Plotting an illness-death-model.
meanNeighbors

Helper function to obtain running means for prodlim objects.
NN

Dummy function
PercentAxis

Percentage-labeled axis.
EventHistory.frame

Event history frame
plot.prodlim

Plotting event probabilities over time
neighborhood

Nearest neighborhoods for kernel smoothing
prodlim

product limit method
summary.prodlim

Summary method for prodlim objects.
markTime

Marking product-limit plots at the censored times.
print.prodlim

Print objects in the prodlim library
SimSurv

Simulate survival data
sindex

Index for evaluation of step functions.
dimColor

Dim a given color to a specified density
predictSurvIndividual

Predict individual survival probabilities
plotCompetingRiskModel

Plotting a competing-risk-model.