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prodlim (version 1.5.0)

Product-limit estimation for censored event history analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

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Version

Install

install.packages('prodlim')

Monthly Downloads

122,547

Version

1.5.0

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

December 5th, 2014

Functions in prodlim (1.5.0)

plot.prodlim

Plotting event probabilities over time
neighborhood

Nearest neighborhoods for kernel smoothing
row.match

Identifying rows in a matrix or data.frame
crModel

Competing risks model for simulation
plotCompetingRiskModel

Plotting a competing-risk-model.
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
backGround

Background and grid color control.
survModel

Survival model for simulation
getStates

States of a multi-state model
strip.terms

Strip special functions from terms
PercentAxis

Percentage-labeled axis.
jackknife

Compute jackknife pseudo values.
model.design

Extract a design matrix and specials from a model.frame
plot.Hist

Box-arrow diagrams for multi-state models.
summary.Hist

Summary of event histories
Hist

Create an event history response variable
print.prodlim

Print objects in the prodlim library
parseSpecialNames

Parse special terms
EventHistory.frame

Event history frame
atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johannsen plots.
sindex

Index for evaluation of step functions.
SimSurv

Simulate survival data
meanNeighbors

Helper function to obtain running means for prodlim objects.
clusterTestData

Data set with a clustered data structure, for testing the product limit method.
predictSurvIndividual

Predict individual survival probabilities
summary.prodlim

Summary method for prodlim objects.
dimColor

Dim a given color to a specified density
SimCompRisk

Simulate competing risks data
getEvent

Extract a column from an event history object.
SmartControl

Function to facilitate the control of arguments passed to subroutines.
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johannsen estimates of survival and cumulative incidence.
leaveOneOut

Compute jackknife pseudo values.
prodlim

product limit method
plotIllnessDeathModel

Plotting an illness-death-model.
markTime

Marking product-limit plots at the censored times.
predict.prodlim

Predicting event probabilities from product limit estimates