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prodlim (version 1.5.1)

Product-limit estimation for censored event history analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

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Version

Install

install.packages('prodlim')

Monthly Downloads

122,547

Version

1.5.1

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

December 10th, 2014

Functions in prodlim (1.5.1)

atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
leaveOneOut

Compute jackknife pseudo values.
print.prodlim

Print objects in the prodlim library
dimColor

Dim a given color to a specified density
SmartControl

Function to facilitate the control of arguments passed to subroutines.
parseSpecialNames

Parse special terms
predict.prodlim

Predicting event probabilities from product limit estimates
summary.Hist

Summary of event histories
plot.prodlim

Plotting event probabilities over time
plotIllnessDeathModel

Plotting an illness-death-model.
markTime

Marking product-limit plots at the censored times.
prodlim

product limit method
sindex

Index for evaluation of step functions.
model.design

Extract a design matrix and specials from a model.frame
plotCompetingRiskModel

Plotting a competing-risk-model.
predictSurvIndividual

Predict individual survival probabilities
crModel

Competing risks model for simulation
SimSurv

Simulate survival data
jackknife

Compute jackknife pseudo values.
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
SimCompRisk

Simulate competing risks data
meanNeighbors

Helper function to obtain running means for prodlim objects.
backGround

Background and grid color control.
PercentAxis

Percentage-labeled axis.
plot.Hist

Box-arrow diagrams for multi-state models.
getStates

States of a multi-state model
getEvent

Extract a column from an event history object.
summary.prodlim

Summary method for prodlim objects.
Hist

Create an event history response variable
EventHistory.frame

Event history frame
neighborhood

Nearest neighborhoods for kernel smoothing
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates of survival and cumulative incidence.
survModel

Survival model for simulation
strip.terms

Strip special functions from terms
row.match

Identifying rows in a matrix or data.frame
clusterTestData

Data set with a clustered data structure, for testing the product limit method.