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prodlim (version 1.5.5)

Product-Limit Estimation for Censored Event History Analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

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Version

Install

install.packages('prodlim')

Monthly Downloads

172,694

Version

1.5.5

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

October 5th, 2015

Functions in prodlim (1.5.5)

atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
SimSurv

Simulate survival data
backGround

Background and grid color control.
Hist

Create an event history response variable
getEvent

Extract a column from an event history object.
clusterTestData

Data set with a clustered data structure, for testing the product limit method.
SmartControl

Function to facilitate the control of arguments passed to subroutines.
SimCompRisk

Simulate competing risks data
PercentAxis

Percentage-labeled axis.
plot.Hist

Box-arrow diagrams for multi-state models.
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates of survival and cumulative incidence.
summary.prodlim

Summary method for prodlim objects.
List2Matrix

Reduce list to a matrix or data.frame with names as new columns
crModel

Competing risks model for simulation
meanNeighbors

Helper function to obtain running means for prodlim objects.
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
markTime

Marking product-limit plots at the censored times.
row.match

Identifying rows in a matrix or data.frame
print.prodlim

Print objects in the prodlim library
predict.prodlim

Predicting event probabilities from product limit estimates
strip.terms

Strip special functions from terms
jackknife

Compute jackknife pseudo values.
summary.Hist

Summary of event histories
survModel

Survival model for simulation
predictSurvIndividual

Predict individual survival probabilities
model.design

Extract a design matrix and specials from a model.frame
EventHistory.frame

Event history frame
plotCompetingRiskModel

Plotting a competing-risk-model.
prodlim

Functions for estimating probabilities from right censored data
neighborhood

Nearest neighborhoods for kernel smoothing
parseSpecialNames

Parse special terms
plot.prodlim

Plotting event probabilities over time
leaveOneOut

Compute jackknife pseudo values.
plotIllnessDeathModel

Plotting an illness-death-model.
sindex

Index for evaluation of step functions.
dimColor

Dim a given color to a specified density
getStates

States of a multi-state model