# prodlim v2019.11.13

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## Product-Limit Estimation for Censored Event History Analysis

Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis. Kaplan-Meier and
Aalen-Johansen method.

## Functions in prodlim

Name | Description | |

checkCauses | Check availability of a cause in competing risk settings | |

SmartControl | Function to facilitate the control of arguments passed to subroutines. | |

Hist | Create an event history response variable | |

SimCompRisk | Simulate competing risks data | |

List2Matrix | Reduce list to a matrix or data.frame with names as new columns | |

backGround | Background and grid color control. | |

SimSurv | Simulate survival data | |

EventHistory.frame | Event history frame | |

PercentAxis | Percentage-labeled axis. | |

atRisk | Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots. | |

confInt | Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates. | |

crModel | Competing risks model for simulation | |

getEvent | Extract a column from an event history object. | |

dimColor | Dim a given color to a specified density | |

meanNeighbors | Helper function to obtain running means for prodlim objects. | |

getStates | States of a multi-state model | |

model.design | Extract a design matrix and specials from a model.frame | |

jackknife | Compute jackknife pseudo values. | |

markTime | Marking product-limit plots at the censored times. | |

leaveOneOut | Compute jackknife pseudo values. | |

plot.Hist | Box-arrow diagrams for multi-state models. | |

plotCompetingRiskModel | Plotting a competing-risk-model. | |

neighborhood | Nearest neighborhoods for kernel smoothing | |

plot.prodlim | Plotting event probabilities over time | |

parseSpecialNames | Parse special terms | |

print.prodlim | Print objects in the prodlim library | |

survModel | Survival model for simulation | |

quantile.prodlim | Quantiles for Kaplan-Meier and Aalen-Johansen estimates. | |

plotIllnessDeathModel | Plotting an illness-death-model. | |

redist | Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate. | |

summary.prodlim | Summary method for prodlim objects. | |

summary.Hist | Summary of event histories | |

prodlim | Functions for estimating probabilities from right censored data | |

predictSurvIndividual | Predict individual survival probabilities | |

stopTime | Stop the time of an event history object | |

predict.prodlim | Predicting event probabilities from product limit estimates | |

strip.terms | Strip special functions from terms | |

row.match | Identifying rows in a matrix or data.frame | |

sindex | Index for evaluation of step functions. | |

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## Details

LinkingTo | Rcpp |

License | GPL (>= 2) |

Packaged | 2019-11-17 12:08:13 UTC; tag |

RoxygenNote | 6.1.1 |

NeedsCompilation | yes |

Repository | CRAN |

Date/Publication | 2019-11-17 12:40:02 UTC |

imports | graphics , grDevices , KernSmooth , lava , Rcpp (>= 0.11.5) , stats , survival |

depends | R (>= 2.9.0) |

Contributors | Thomas Gerds |

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