prodlim v2019.11.13

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Product-Limit Estimation for Censored Event History Analysis

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

Functions in prodlim

Name Description
checkCauses Check availability of a cause in competing risk settings
SmartControl Function to facilitate the control of arguments passed to subroutines.
Hist Create an event history response variable
SimCompRisk Simulate competing risks data
List2Matrix Reduce list to a matrix or data.frame with names as new columns
backGround Background and grid color control.
SimSurv Simulate survival data
EventHistory.frame Event history frame
PercentAxis Percentage-labeled axis.
atRisk Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
confInt Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates.
crModel Competing risks model for simulation
getEvent Extract a column from an event history object.
dimColor Dim a given color to a specified density
meanNeighbors Helper function to obtain running means for prodlim objects.
getStates States of a multi-state model
model.design Extract a design matrix and specials from a model.frame
jackknife Compute jackknife pseudo values.
markTime Marking product-limit plots at the censored times.
leaveOneOut Compute jackknife pseudo values.
plot.Hist Box-arrow diagrams for multi-state models.
plotCompetingRiskModel Plotting a competing-risk-model.
neighborhood Nearest neighborhoods for kernel smoothing
plot.prodlim Plotting event probabilities over time
parseSpecialNames Parse special terms
print.prodlim Print objects in the prodlim library
survModel Survival model for simulation
quantile.prodlim Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
plotIllnessDeathModel Plotting an illness-death-model.
redist Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate.
summary.prodlim Summary method for prodlim objects.
summary.Hist Summary of event histories
prodlim Functions for estimating probabilities from right censored data
predictSurvIndividual Predict individual survival probabilities
stopTime Stop the time of an event history object
predict.prodlim Predicting event probabilities from product limit estimates
strip.terms Strip special functions from terms
row.match Identifying rows in a matrix or data.frame
sindex Index for evaluation of step functions.
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Details

LinkingTo Rcpp
License GPL (>= 2)
Packaged 2019-11-17 12:08:13 UTC; tag
RoxygenNote 6.1.1
NeedsCompilation yes
Repository CRAN
Date/Publication 2019-11-17 12:40:02 UTC

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