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prodlim (version 2023.08.28)

Product-Limit Estimation for Censored Event History Analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

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Version

Install

install.packages('prodlim')

Monthly Downloads

151,168

Version

2023.08.28

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

August 28th, 2023

Functions in prodlim (2023.08.28)

meanNeighbors

Helper function to obtain running means for prodlim objects.
model.design

Extract a design matrix and specials from a model.frame
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates.
crModel

Competing risks model for simulation
neighborhood

Nearest neighborhoods for kernel smoothing
prodlim-package

Kaplan-Meier and Aalen-Johansen method
print.prodlim

Print objects in the prodlim library
plotCompetingRiskModel

Plotting a competing-risk-model.
plotIllnessDeathModel

Plotting an illness-death-model.
parseSpecialNames

Parse special terms
strip.terms

Strip special functions from terms
sindex

Index for evaluation of step functions.
plot.prodlim

Plotting event probabilities over time
stopTime

Stop the time of an event history object
plot.Hist

Box-arrow diagrams for multi-state models.
redist

Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate.
survModel

Survival model for simulation
summary.Hist

Summary of event histories
predict.prodlim

Predicting event probabilities from product limit estimates
summary.prodlim

Summary method for prodlim objects.
prodlim

product limit method
row.match

Identifying rows in a matrix or data.frame
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
predictSurvIndividual

Predict individual survival probabilities
EventHistory.frame

Event history frame
List2Matrix

Reduce list to a matrix or data.frame with names as new columns
Hist

Create an event history response variable
SmartControl

Function to facilitate the control of arguments passed to subroutines.
backGround

Background and grid color control.
PercentAxis

Percentage-labeled axis.
getStates

States of a multi-state model
SimCompRisk

Simulate competing risks data
SimSurv

Simulate survival data
jackknife

Compute jackknife pseudo values.
checkCauses

Check availability of a cause in competing risk settings
dimColor

Dim a given color to a specified density
atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
getEvent

Extract a column from an event history object.
leaveOneOut

Compute jackknife pseudo values.
markTime

Marking product-limit plots at the censored times.