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progenyClust (version 1.2)

Finding the Optimal Cluster Number Using Progeny Clustering

Description

Implementing the Progeny Clustering algorithm, the 'progenyClust' package assesses the clustering stability and identifies the optimal clustering number for a given data matrix. It uses k-means clustering as a default, provides a tailored hierarchical clustering function, and can be customized to work with other clustering algorithms and different parameter settings. The package includes a main function progenyClust(), plot and summary methods for 'progenyClust' object, a function hclust.progenyClust() for hierarchical clustering, and two example datasets (test and cell) for testing.

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Version

Install

install.packages('progenyClust')

Monthly Downloads

128

Version

1.2

License

AGPL-3

Maintainer

C.W. Hu

Last Published

April 12th, 2016

Functions in progenyClust (1.2)

progenyClust

Progeny Clustering
cell

cell imaging metrics dataset
plot.progenyClust

Plot Progeny Clustering Results
hclust.progenyClust

Hierarchical Clustering
test

3-cluster 2-dimensional test dataset
progenyClust-package

Finding the Optimal Cluster Number Using Progeny Clustering