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projections (version 0.6.1)

Project Future Case Incidence

Description

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) . The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.

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Version

Install

install.packages('projections')

Monthly Downloads

393

Version

0.6.1

License

MIT + file LICENSE

Maintainer

Thibaut Jombart

Last Published

December 6th, 2024

Functions in projections (0.6.1)

print.projections

Print method for projections objects
merge_projections

Merge a list of projections objects
build_projections

Constructor for projections objects
plot.projections

Plot projections objects
as.matrix.projections

Conversion of projections objects
cumulate.projections

Compute cumulative projections
[.projections

Subsetting 'projections' objects
get_dates

Access content projections objects
merge_add_projections

Add data of different projections objects
project

Project future incidence
summary.projections

Summary for projections objects