propr (version 4.2.6)

getNetwork: Get Network from Object

Description

This function provides a unified wrapper to build networks from propr and propd objects.

Usage

getNetwork(object, cutoff = NA, propr.object, propr.cutoff = NA,
  thetad.object, thetad.cutoff = NA, thetae.object, thetae.cutoff = NA,
  col1, col2, include = NA, or = TRUE, d3 = FALSE)

Arguments

object

Any propr or propd object.

cutoff

A cutoff argument for object, passed to getResults.

propr.object, thetad.object, thetae.object

A propr object or an appropriate propd object.

propr.cutoff, thetad.cutoff, thetae.cutoff

A cutoff argument passed to getResults.

col1

A character vector. Specifies which nodes to color red or blue, respectively.

col2

A character vector. Specifies which nodes to color red or blue, respectively.

include

This argument indicates which features by name should belong to a pair for that pair to get included in the results. Subset performed by Partner %in% subset | Pair %in% subset.

or

A boolean. If FALSE, include subsets by Partner %in% subset & Pair %in% subset.

d3

A boolean. Use rgl to plot 3D network.

Value

A network object.