genSwathIonLib

data set containing mZ and peptide sequence.

data

mascotIonScoreCutOFF

proteinIDPattern

outputFile

This function generates an ion library for SWATH analysis. It reads mascot dat-files and can be used with an Ion score filter.

swath

This R package helps with quality checks, vizualizations
        and analysis of mass spectrometry data, coming from proteomics
        experiments. The package is developed, tested and used at the
        Functional Genomics Center Zurich. We use this package mainly
        for prototyping, teaching, and having fun with proteomics data.
        But it can also be used to do solid data analysis for small
        scale data sets.

swath: SWATH exporter

Description

Usage

Arguments

Details