protViz - Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Documentation
The package ships with two pdf vignettes.
browseVignettes('protViz')
vignette('protViz')
vignette('PTM_MarkerFinder')Installation
CRAN
install.packages('protViz')from github
install the latest development version
install.packages('devtools')
library(devtools)
install_git('https://github.com/cpanse/protViz', build_vignettes = FALSE, quiet = FALSE)
library(protViz)or
BiocManager::install('cpanse/protViz')R CMD build hints
Rcpp::compileAttributes()
tools::package_native_routine_registration_skeleton(".", character_only = FALSE)
RcppExport SEXP _rcpp_module_boot_MyModule();
static const R_CallMethodDef CallEntries[] = {
{"_rcpp_module_boot_MyModule", (DL_FUNC) &_rcpp_module_boot_MyModule, 0},
{NULL, NULL, 0}
};
RcppExport void R_init_minModuleEx(DllInfo *dll) {
R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
R_useDynamicSymbols(dll, FALSE);
}
Docker
docker pull cpanse/protviz \
&& docker run -d -p 8792:8787 cpanse/protviz connect to http://yourdockerhost:8791 using a web browser
- username: rstudio
- password: rstudio
Documentation
The package ships with a package vignette (browseVignettes('protViz') and a reference manual (just type ?protViz on the R shell).
Both documents are also available on the package's CRAN page.