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protein8k (version 0.0.1)

p53_tetramerization: P53 Tetramerization Domain Crystal Structure

Description

Formal class protein representing data from a PDB, code 1AIE, p53 tetramerization Domain Crystal Structure. This is a small and simple R object of example data for users to play with and is used in example vignettes.

Usage

p53_tetramerization

Arguments

Format

A Protein S4 object. List comprised of several sublists and dataframes

  • header: List of 2, Header Line and Title

    • header_line: List of 3, Classification, depDate, and idCode

      • classifiation: Classification of the Protein in the PDB

      • depDat: Date the PDB was deposited or created

      • idCode: 4 digit identifier for the PDB. Always unique.

    • title: The title of the PDB.

  • structure: Dataframe of 16 variables

    1. record_type:Type of record in this section. Generally ATOM or HETATM

    2. serial_num: The serial number for the position of the atom in the sequence

    3. atom_name: A name to identify the atom in a structure

    4. alt_location_id:

    5. residue_name: 3 character identifier for a residue

    6. chain_id:

    7. residue_seq_num: Number representing where in the sequence a residue is.

    8. insert_residue_code:

    9. x_ortho_coord: X coordinate in <U+00C5>ngstroms on an orthogonal plane

    10. y_ortho_coord: Y coordinate in <U+00C5>ngstroms on an orthogonal plane

    11. z_ortho_coord: Z coordinate in <U+00C5>ngstroms on an orthogonal plane

    12. occupancy:

    13. temp_factor: The amount of overall error in the measurement of an atom.

    14. segment_id:

    15. element_symbol: Periodic symbol representing an atom.

    16. charge: Charge of the given atom. Can be +, -, or none at all