proteomics (version 0.2)

pRetention: Plot Retention Time Statistics

Description

Plot retention times with possible outliers

Usage

pRetention(rwide)

Arguments

rwide

iTRAQ data in wide format with retention time information

Examples

## Not run: 
# iglobal <- addIonSatistics(pglobal)
# rglobal <- addRetentionTimeStatistics(iglobal, .parallel=TRUE)
# rglob$outlier <- with(rglob, abs(retention.atApex - retention) > 4)
# p <- pRetention(rglobal)
# 
# p + geom_point(aes(retention.atApex, retention))
# p + geom_point(aes(retention.atApex, retention-retention.atApex))
# p + geom_point(aes(ppm, retention-retention.atApex))
# p + geom_density(aes(x=ppm), alpha=.242)
# ## End(Not run)