selectByConfidence

threshold

Is the threshold given a fold change or
  a log2-fold change.  Default ist TRUE.

foldchange


  The result file filtered by contains on the confidence
  intervals.  This function will use these confidence
  intervals to filter out biological irrelevant effects.


Provides methods for making inference in isobaric labelled
LC-MS/MS experiments, i.e. iTRAQ experiments. It provides a function that
reasonably parses a CSV-export from Proteome Discoverer(TM) into a data
frame that can be easily handled in R. Functions and methods are provided
for quality control, filtering, norming, and the calculation of response
variables for further analysis. The merging of multiple iTRAQ experiments
with respect to a reference is also covered.

selectByConfidence: Result filtering -- Test for biological effect

Description

Usage

Arguments