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protoshiny (version 0.1.0)

Interactive Dendrograms for Visualizing Hierarchical Clusters with Prototypes

Description

Shiny app to interactively visualize hierarchical clustering with prototypes. For details on hierarchical clustering with prototypes, see Bien and Tibshirani (2011) . This package currently launches the application.

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Version

Install

install.packages('protoshiny')

Monthly Downloads

143

Version

0.1.0

License

GPL-3

Maintainer

Andee Kaplan

Last Published

May 18th, 2022

Functions in protoshiny (0.1.0)

faces

Dataset faces
as.protoclust

Convert a generic hclust object to a protoclust object.
get_clusters

Extract cluster labels
get_nodes_to_expand_info

Get the labels of each interior node
get_paths_from_cut

Given a clustering get the root-to-node paths for visible nodes
covid19

Dataset covid19
get_cut_from_merge_id

Get clustering of leaves from merge_id
fixUploadedFilesNames

Fix uploaded files are getting renamed
branch

Get an hclust object consisting of the branch with root given by a particular interior node
get_server

Server function
get_ui

UI function
load_obj

Load an object into a new environment
movies

Dataset movies
dynGraph

Dynamic element of class "d3graph"
words

Dataset words
visualize_hc

Run a local instance of protoshiny
selectJS

Dynamic element of class "select_custom"
upper

Get the upper cut of a protoclust object
seaflow

Dataset seaflow
protoclust_to_json

Convert a protoclust object to a JSON tree