prozor (version 0.3.1)

makeIDUnip: make id for chain compatible with uniprot

Description

make id for chain compatible with uniprot

Usage

makeIDUnip(sequence, id, sp)

Arguments

sequence

- aa sequence as string

id

uniprot id id: sp|P30443|1A01_HUMAN

sp

start position of chain numeric

Value

string consisting of sp,"-", length of sequnce

Examples

# NOT RUN {
seq <- "MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGR\
GEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRN\
MKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ\
DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRC\
VDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEI\
TLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQ\
HEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRK\
SSDRKGGSYTQAASSDSAQGSDVSLTACKV"
nam <-"sp|P30443|1A01_HUMAN"
sp <- 24
makeIDUnip(seq, nam, sp)
# }