psSubpathway (version 0.1.0)

plotSubSEScurve: Polt subtype set sample enrichment score curve graph

Description

Draw an sample enrichment score curve graph of a single or all subtypes.

Usage

plotSubSEScurve(inputdata, spwid = "", phenotype = "all")

Arguments

inputdata

A list of result data generated by function `SubSEA` or `DCSA`.

spwid

The subpathway id which the user wants to plot.

phenotype

The `phenotype`` specifies which phenotypic phenotype set enrichment curve is drawn for subpathway. When `phenotype="all"` (default), the phenotype set enrichment score curve graph of subpathway under all phenotypes is drawn.

Value

an enrichment score curve graph

Details

plotSubSEScurve

Plot an phenotype set enrichment score curve graph of a subpathway under all phenotypes or specified phenotype,including the location of the maximum enrichment score (ES) and the leading-edge subset.This function can only be used for the results of the `SubSEA` function.

Examples

# NOT RUN {
# get the results of the SubSEA function for breast cancer subtypes.
Subspwresult<-get("Subspwresult")
# plot enrichment score curve of the subpathway 00120_9 in all breast cancer subtypes.
plotSubSEScurve(Subspwresult,spwid="00120_9",phenotype="all")
# plot enrichment score curve of the subpathway 00120_9 in the basal breast cancer subtypes.
plotSubSEScurve(Subspwresult,spwid="00120_9",phenotype="Basal")
# }